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ForumsCOA & Analytical TestingLC-MS/MS vs HPLC for peptide analysis — which is more reliable? Page 3

LC-MS/MS vs HPLC for peptide analysis — which is more reliable?

HPLC_Greg Wed, Jun 3, 2026 at 8:25 AM 19 replies 492 viewsPage 3 of 4
roxy_nash
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Jun 4, 2026 at 1:23 PM#11
LibrarianMeg said:
They are not contradictory, they measure different things, and this is the single most common misreading of a certificate.

Thank you for spelling out the reasoning rather than just the conclusion. Sending this to two other people who asked me the same thing last week.

23 21josh_phd_bmore, roxy_nash, tony_orlando and 20 others
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Dr.ReproEndo
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Jun 5, 2026 at 12:02 AM#12

Adding the clinical framing, because it changes how the question reads.

Vendor quality matters when discussing certificates of analysis. I've tested my last 5 batches through Janoshik and purity has ranged from 97.0% to 99.6%. Consistency is key.

For anyone new: always request the COA, and consider independent verification. The $300 for a Janoshik test is worth the peace of mind.

24 22andrew_nyc, Dr.EndoEP, GraceAZ_72 and 21 others
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Dr.LipidDallas
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Jun 5, 2026 at 10:41 AM#13
Dr.NateNeph said:
Third-party testing services for certificates of analysis besides Janoshik: Janoshik: Gold standard for peptide community, ~$133, 10-14 day turnaround…

My vendor review relevant to certificates of analysis: ordered 4 times from my current compounder. Consistency has been excellent.

Shipping: 2-day priority with gel ice
Packaging: Professional, discreet, proper labeling with lot/batch numbers
Purity: 98.5% average across orders (Janoshik verified)
Customer service: Responsive within 4 hours
Price: $149/month for tirzepatide 10mg equivalent

25 23cory_ATX, lori_vegas, Dr.PulmRoch and 22 others
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Sigma-Aldrich — Research-Grade Standards

Certified reference materials, analytical reagents, and research-grade standards for peptide verification. Trusted by laboratories worldwide.

Shop Reference Standards
FDA_TrackerJim
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Jun 5, 2026 at 9:20 PM#14
HPLC_Greg said:
The provenance questions are more useful than the numbers.

I tested my certificates of analysis batch through Janoshik — 98.4% purity. That's within acceptable range for compounded peptides. Turnaround was 10 business days.

The test costs ~$148 but gives you actual HPLC chromatography data plus mass spec confirmation. For the peace of mind alone, it's worth every penny. I test every new batch from a new vendor.

Last edited: Jun 6, 2026 at 12:20 AM
26 24Dr.LeslieOBGYN, MikeNYC_runner and 23 others
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mike_mod
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Jun 6, 2026 at 7:59 AM#15

Moderator note: a couple of off-topic posts removed.

27 0PurityPaulOR, MaxMetOK, MounjBrad and 24 others
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