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ForumsPharmacology & MechanismsMolecular dynamics simulations of GLP-1R binding — computational data

Molecular dynamics simulations of GLP-1R binding — computational data

raj_cambridge Thu, May 28, 2026 at 12:33 PM 18 replies 630 viewsPage 1 of 4
raj_cambridge
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May 28, 2026 at 12:33 PM#1

Read the primary source rather than the write-up and the two do not agree, so here is what is actually in it.

The mechanism is more central than most summaries suggest. Receptor agonism in the arcuate nucleus activates POMC neurons and inhibits AgRP/NPY signalling, and the downstream MC4R pathway is the same one disrupted in monogenic obesity — convergent genetic evidence that the target is the right one. Peripherally there is glucose-dependent insulin secretion, glucagon suppression and delayed gastric emptying, but the gastric component largely adapts over months while the central effect persists, which is why the durable effect is appetite rather than fullness.

Where I think it is weakest: the subgroup findings are the part I trust least — with enough subgroups something is always significant, and these were not all pre-registered.

What I am after is which effects tachyphylax and which persist, because the answer explains why tolerability improves while the appetite effect keeps working. Not looking for reassurance. Looking for the part I have got wrong.

Note on sourcing:
Figures above are from the primary publication rather than the press summary. If a number here disagrees with one you have, post yours and we will work out which of us is reading a secondary source.
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anders_CPH
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May 28, 2026 at 1:05 PM#2
raj_cambridge said:
The mechanism is more central than most summaries suggest.

Receptor pharmacology relevant to the pharmacology: semaglutide is a GLP-1R agonist with a C-18 fatty acid chain that enables albumin binding (>99%), creating a depot effect with a ~168-hour half-life enabling weekly dosing[1].

Tirzepatide is a dual GIP/GLP-1R agonist with higher GIP affinity (5:1 GIP:GLP-1 potency ratio). The GIP component may enhance beta-cell function and adipocyte lipid metabolism beyond what GLP-1 alone achieves.

For the pharmacology, the pharmacology explains the clinical differences between these agents.

References:
[1] Lau J, et al. J Med Chem. 2015;58(18):7370-7380.
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VendorMark
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May 28, 2026 at 1:37 PM#3
raj_cambridge said:
The mechanism is more central than most summaries suggest.

Filing a mild objection. Mild because I might be wrong; an objection because nobody has addressed the case that does not fit. The pharmacokinetics explain nearly every practical question asked here. Albumin binding above 99% slows clearance enough to make weekly dosing possible; a terminal half-life near a week means four to five weeks to steady state and therefore a four-week titration interval; subcutaneous bioavailability around 89% means injection site barely matters. Those three facts answer most timing questions before they are asked.

That is the short version; the long version is somebody else's post.

Last edited: May 28, 2026 at 3:37 PM
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TrialTracker_MD
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May 28, 2026 at 2:09 PM#4
VendorMark said:
The pharmacokinetics explain nearly every practical question asked here.

Amycretin (AMY/GLP-1 dual agonist) emerging data relevant to the pharmacology: Phase 1 showed -13.1% body weight at only 12 weeks, the fastest trajectory ever seen for an anti-obesity agent[1].

Amylin receptor agonism enhances satiety signaling through the area postrema and reduces glucagon secretion. Combined with GLP-1R agonism, this dual mechanism may produce even greater efficacy than current agents.

Early-stage data — interpret with caution. But the trajectory is extraordinary.

References:
[1] Novo Nordisk investor presentation, September 2023.
Last edited: May 28, 2026 at 7:09 PM
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PharmHunterJen
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May 28, 2026 at 5:12 PM#5
anders_CPH said:
Receptor pharmacology relevant to the pharmacology: semaglutide is a GLP-1R agonist with a C-18 fatty acid chain that enables albumin binding (>99%),…

Same pattern here, and in the same order. Nothing to add that would improve it.

Last edited: May 28, 2026 at 11:12 PM
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